TF_ChIP-seq_ENCSR000ECR
TF_ChIP-seq ENCSR000ECR [biosample_summary="Homo sapiens HeLa-S3" and target="KAT2A"]
×
| Id: | TF_ChIP-seq/ENCSR000ECR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000ECR [biosamplesummary="Homo sapiens HeLa-S3" and target="KAT2A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN453KMQ|/analyses/ENCAN453KMQ/} has in progress subobject document {216f3c74-d35f-4f56-b62f-4c458505ca25|/documents/216f3c74-d35f-4f56-b62f-4c458505ca25/} audit_internal_action: Released analysis {ENCAN453KMQ|/analyses/ENCAN453KMQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF761QAB|/files/ENCFF761QAB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11751344 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting KAT2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF508CLI|/files/ENCFF508CLI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15698403 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting KAT2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF761QAB|/files/ENCFF761QAB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF761QAB|/files/ENCFF761QAB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.65. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ECR | float |
TF_ChIP-seq_ENCSR000ECR |
TF_ChIP-seq ENCSR000ECR [biosample_summary="Homo sapiens HeLa-S3" and target="KAT2A"]
|
|
[4.87, 121] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF013GAH.bed.gz | 4.74 KB | 27b474f81ae9960d1b1cc85651ba0cb6 |
| ENCFF013GAH.bed.gz.dvc | 98.0 B | e4c47ebfc7c51743acd33b26f6b5a8a4 |
| ENCFF013GAH.tabix.bed.gz | 2.98 KB | cd56cc23dc92fc3cfc9cfde3c7e71310 |
| ENCFF013GAH.tabix.bed.gz.dvc | 104.0 B | 4a24e5a6856e4b60b43cccaa09197897 |
| ENCFF013GAH.tabix.bed.gz.tbi | 5.68 KB | 9c4a6da89f1208408dbf7167666d00db |
| ENCFF013GAH.tabix.bed.gz.tbi.dvc | 108.0 B | 7391a0c82e2abd8fb1c5a06c0646a55f |
| genomic_resource.yaml | 3.88 KB | 7f9307238dd627cddf682c509ce64ecd |
| genomic_resource_original.yaml | 3.79 KB | 4b8a3c9d11d03d3375dfd335ebd42376 |
| statistics/ |