TF_ChIP-seq_ENCSR000ECL
TF_ChIP-seq ENCSR000ECL [biosample_summary="Homo sapiens HeLa-S3" and target="MAZ"]
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| Id: | TF_ChIP-seq/ENCSR000ECL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000ECL [biosamplesummary="Homo sapiens HeLa-S3" and target="MAZ"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN556KME|/analyses/ENCAN556KME/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN556KME|/analyses/ENCAN556KME/} has in progress subobject document {683512be-623a-4e3e-bd53-d80bce656721|/documents/683512be-623a-4e3e-bd53-d80bce656721/} audit_warning: Processed alignments file {ENCFF954EHQ|/files/ENCFF954EHQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16699965 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MAZ-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF424JHD|/files/ENCFF424JHD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.39 and a self consistency ratio of 3.16. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ECL | float |
TF_ChIP-seq_ENCSR000ECL |
TF_ChIP-seq ENCSR000ECL [biosample_summary="Homo sapiens HeLa-S3" and target="MAZ"]
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[7.52, 354] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF424JHD.bed.gz | 301.61 KB | 24ff07bf87bf854c867033b193710c19 |
| ENCFF424JHD.bed.gz.dvc | 100.0 B | 2e613703b918aeeecc2c594a475ec055 |
| ENCFF424JHD.tabix.bed.gz | 220.1 KB | 0158a5e347ac4b9e45448d73e28023af |
| ENCFF424JHD.tabix.bed.gz.dvc | 106.0 B | 0b449a6fa70c7ada91cda010b924e9d7 |
| ENCFF424JHD.tabix.bed.gz.tbi | 99.72 KB | f79c16d76a6e8d68ae110ac6b2649d88 |
| ENCFF424JHD.tabix.bed.gz.tbi.dvc | 110.0 B | 9e1bf720a99aa299bda8b73ebb2447e6 |
| genomic_resource.yaml | 2.6 KB | d5a2d6d2e3f1c2289c6b0f51794fb6a8 |
| genomic_resource_original.yaml | 2.5 KB | 4c9ec50684eb3aadadad316f0250cfdb |
| statistics/ |