TF_ChIP-seq_ENCSR000ECK
TF_ChIP-seq ENCSR000ECK [biosample_summary="Homo sapiens HeLa-S3" and target="MAFK"]
×
| Id: | TF_ChIP-seq/ENCSR000ECK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000ECK [biosamplesummary="Homo sapiens HeLa-S3" and target="MAFK"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN433UIP|/analyses/ENCAN433UIP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN433UIP|/analyses/ENCAN433UIP/} has in progress subobject document {c0cc476b-6881-4657-8257-612cb564ce4d|/documents/c0cc476b-6881-4657-8257-612cb564ce4d/} audit_warning: Processed alignments file {ENCFF533LDY|/files/ENCFF533LDY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15680477 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MAFK-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF425IRA|/files/ENCFF425IRA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.44 and a self consistency ratio of 3.10. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ECK | float |
TF_ChIP-seq_ENCSR000ECK |
TF_ChIP-seq ENCSR000ECK [biosample_summary="Homo sapiens HeLa-S3" and target="MAFK"]
|
|
[8.46, 528] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF425IRA.bed.gz | 263.14 KB | 18673566356bdae515a0f4562abcacdf |
| ENCFF425IRA.bed.gz.dvc | 100.0 B | b4d6156d5fb6c5c806124fbb03fedd26 |
| ENCFF425IRA.tabix.bed.gz | 176.04 KB | 82220798dbf878c83f313522daddc581 |
| ENCFF425IRA.tabix.bed.gz.dvc | 106.0 B | 0913457c3486c1bc2bee65135f8bcc05 |
| ENCFF425IRA.tabix.bed.gz.tbi | 117.79 KB | 647b04172cc182bd54c7ca927d6f3e6a |
| ENCFF425IRA.tabix.bed.gz.tbi.dvc | 110.0 B | 64b7c93bb402ee6eaba0247721b43733 |
| genomic_resource.yaml | 2.6 KB | 4ac5cad0a6a711c3d3389112df33e257 |
| genomic_resource_original.yaml | 2.51 KB | b13e215b91eb048c58babb6b42dd8eac |
| statistics/ |