TF_ChIP-seq_ENCSR000ECI
TF_ChIP-seq ENCSR000ECI [biosample_summary="Homo sapiens HeLa-S3" and target="ELK1"]
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| Id: | TF_ChIP-seq/ENCSR000ECI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000ECI [biosamplesummary="Homo sapiens HeLa-S3" and target="ELK1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN301IMC|/analyses/ENCAN301IMC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN301IMC|/analyses/ENCAN301IMC/} has in progress subobject document {03cb356b-cbcd-4477-85d8-02a6893c62fb|/documents/03cb356b-cbcd-4477-85d8-02a6893c62fb/} audit_warning: Processed alignments file {ENCFF336STH|/files/ENCFF336STH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 18614701 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ELK1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF279OML|/files/ENCFF279OML/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.10 and a self consistency ratio of 2.65. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ECI | float |
TF_ChIP-seq_ENCSR000ECI |
TF_ChIP-seq ENCSR000ECI [biosample_summary="Homo sapiens HeLa-S3" and target="ELK1"]
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[6.5, 551] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF279OML.bed.gz | 112.34 KB | 4702dc21906c7fb21b3caa2bbe9a6c29 |
| ENCFF279OML.bed.gz.dvc | 100.0 B | f6aad101d181bec155c5b18304364d8e |
| ENCFF279OML.tabix.bed.gz | 78.4 KB | b8214ef147c6fa8410fe82f9b89e0a2d |
| ENCFF279OML.tabix.bed.gz.dvc | 105.0 B | c8c426b99d2402f09eb52c58ca188bfa |
| ENCFF279OML.tabix.bed.gz.tbi | 52.82 KB | a1efc0f7073f3c2156c11f3ee9595c4b |
| ENCFF279OML.tabix.bed.gz.tbi.dvc | 109.0 B | 2883a1a06e8aee4ad4032be16b9dc3cf |
| genomic_resource.yaml | 2.6 KB | 37ebc6ccb4a888dfac30d034ab8f8c80 |
| genomic_resource_original.yaml | 2.51 KB | 9ea0489b1cc4d7d46e0eee535e97bdd9 |
| statistics/ |