TF_ChIP-seq_ENCSR000ECF
TF_ChIP-seq ENCSR000ECF [biosample_summary="Homo sapiens H1" and target="RFX5"]
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| Id: | TF_ChIP-seq/ENCSR000ECF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000ECF [biosamplesummary="Homo sapiens H1" and target="RFX5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF062WBN|/files/ENCFF062WBN/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN232UNA|/analyses/ENCAN232UNA/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF471WJE|/files/ENCFF471WJE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16388448 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RFX5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF892QCI|/files/ENCFF892QCI/}, {ENCFF459SEB|/files/ENCFF459SEB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.51 and a self consistency ratio of 2.96. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF062WBN|/files/ENCFF062WBN/}, {ENCFF131CHB|/files/ENCFF131CHB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.51 and a self consistency ratio of 2.96. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ECF | float |
TF_ChIP-seq_ENCSR000ECF |
TF_ChIP-seq ENCSR000ECF [biosample_summary="Homo sapiens H1" and target="RFX5"]
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[6.56, 658] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF062WBN.bed.gz | 42.4 KB | 7417b8d5ef128ebb9612050dcda350e9 |
| ENCFF062WBN.bed.gz.dvc | 99.0 B | 19e2ffefbc203a5f2ae34ab547805094 |
| ENCFF062WBN.tabix.bed.gz | 29.01 KB | 9ca81a91fc7c70784b5c0d732a18ec0b |
| ENCFF062WBN.tabix.bed.gz.dvc | 105.0 B | d29ad80b5de608c08ff83e0f7e0e9a4a |
| ENCFF062WBN.tabix.bed.gz.tbi | 25.12 KB | 11667810018d8cfec130cb8eb224a2d7 |
| ENCFF062WBN.tabix.bed.gz.tbi.dvc | 109.0 B | a567d72485017023372055f9c7f5c5f5 |
| genomic_resource.yaml | 3.15 KB | 3860c6fab7af7ad9fe0bb03190ad82cc |
| genomic_resource_original.yaml | 3.05 KB | 6b53c3553e1c9e311706aac111d82365 |
| statistics/ |