TF_ChIP-seq_ENCSR000ECC
TF_ChIP-seq ENCSR000ECC [biosample_summary="Homo sapiens H1" and target="NRF1"]
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| Id: | TF_ChIP-seq/ENCSR000ECC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000ECC [biosamplesummary="Homo sapiens H1" and target="NRF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN320HVY|/analyses/ENCAN320HVY/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF563ODJ|/files/ENCFF563ODJ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18342898 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NRF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF563ODJ|/files/ENCFF563ODJ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF563ODJ|/files/ENCFF563ODJ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ECC | float |
TF_ChIP-seq_ENCSR000ECC |
TF_ChIP-seq ENCSR000ECC [biosample_summary="Homo sapiens H1" and target="NRF1"]
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[5.76, 404] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF508IBP.bed.gz | 85.63 KB | 665542539f7b759c7b820632d8d8d8c3 |
| ENCFF508IBP.bed.gz.dvc | 99.0 B | b4230ac5e8e9b7edcf5fd67af17b2dd9 |
| ENCFF508IBP.tabix.bed.gz | 58.47 KB | a922ab4d6e4815ddc4ab67cf038b686f |
| ENCFF508IBP.tabix.bed.gz.dvc | 105.0 B | 34d04f4c24d76ab12da5b8571c9a82b2 |
| ENCFF508IBP.tabix.bed.gz.tbi | 47.34 KB | 0ae0bfae7e8695e57fb458f22318d9b0 |
| ENCFF508IBP.tabix.bed.gz.tbi.dvc | 109.0 B | b75fc3f0ef42b35220d85c9d8bf93e23 |
| genomic_resource.yaml | 3.13 KB | 0cf90ecfb9378e590445b1747c5b91c3 |
| genomic_resource_original.yaml | 3.04 KB | c171cc1f9ea83464867cecbb5fd41507 |
| statistics/ |