TF_ChIP-seq_ENCSR000ECB
TF_ChIP-seq ENCSR000ECB [biosample_summary="Homo sapiens H1" and target="TBP"]
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| Id: | TF_ChIP-seq/ENCSR000ECB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000ECB [biosamplesummary="Homo sapiens H1" and target="TBP"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN330HWD|/analyses/ENCAN330HWD/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF748YXF|/files/ENCFF748YXF/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF111DMT|/files/ENCFF111DMT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16689402 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TBP-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF108YPE|/files/ENCFF108YPE/}, {ENCFF748YXF|/files/ENCFF748YXF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.23 and a self consistency ratio of 2.04. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF515XWW|/files/ENCFF515XWW/}, {ENCFF531CZP|/files/ENCFF531CZP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.23 and a self consistency ratio of 2.04. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ECB | float |
TF_ChIP-seq_ENCSR000ECB |
TF_ChIP-seq ENCSR000ECB [biosample_summary="Homo sapiens H1" and target="TBP"]
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[5.67, 618] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF748YXF.bed.gz | 390.71 KB | d91c6161ca0615e10045d7408ea25edb |
| ENCFF748YXF.bed.gz.dvc | 100.0 B | 17b15730f5f26085d1002e6574450295 |
| ENCFF748YXF.tabix.bed.gz | 287.16 KB | d5931feab487c067c7bf97e8b42d8da3 |
| ENCFF748YXF.tabix.bed.gz.dvc | 106.0 B | cede32ba91cb88304863c2ca91302d35 |
| ENCFF748YXF.tabix.bed.gz.tbi | 135.24 KB | 1ab63b40cd411af4daac225d894f8aaa |
| ENCFF748YXF.tabix.bed.gz.tbi.dvc | 110.0 B | 1ae5fb8dfe00296fedb19b2cacb45879 |
| genomic_resource.yaml | 3.14 KB | dcce0e3116bb90f14dd0de26361fbad4 |
| genomic_resource_original.yaml | 3.05 KB | 7d23b4a6caa9a04603bd20eb7c84a7cf |
| statistics/ |