TF_ChIP-seq_ENCSR000ECA
TF_ChIP-seq ENCSR000ECA [biosample_summary="Homo sapiens H1" and target="JUN"]
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| Id: | TF_ChIP-seq/ENCSR000ECA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000ECA [biosamplesummary="Homo sapiens H1" and target="JUN"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN609IPW|/analyses/ENCAN609IPW/} has in progress subobject document {91f10427-5edf-428d-ba9f-e32d56298d68|/documents/91f10427-5edf-428d-ba9f-e32d56298d68/} audit_internal_action: Released analysis {ENCAN609IPW|/analyses/ENCAN609IPW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF815LHP|/files/ENCFF815LHP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 18190617 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting JUN-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF815LHP|/files/ENCFF815LHP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF815LHP|/files/ENCFF815LHP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.17. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF102CGF|/files/ENCFF102CGF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF102CGF|/files/ENCFF102CGF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ECA | float |
TF_ChIP-seq_ENCSR000ECA |
TF_ChIP-seq ENCSR000ECA [biosample_summary="Homo sapiens H1" and target="JUN"]
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[5.24, 160] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF821GUI.bed.gz | 50.42 KB | 87c44e535cd63d9148fd57c810268567 |
| ENCFF821GUI.bed.gz.dvc | 99.0 B | 0e3d5e4c897e75a0e44fac7be4454c4a |
| ENCFF821GUI.tabix.bed.gz | 32.59 KB | f741a3822e7ec3da1aa4ac1fbccaef56 |
| ENCFF821GUI.tabix.bed.gz.dvc | 105.0 B | c4cd4b2044de6722950e495083038cb0 |
| ENCFF821GUI.tabix.bed.gz.tbi | 32.03 KB | 917f3c0ea303686567d1d46e477d5f22 |
| ENCFF821GUI.tabix.bed.gz.tbi.dvc | 109.0 B | b1f8a32f625c1a627716edd8d2ffa2aa |
| genomic_resource.yaml | 4.67 KB | 19860f9e33552790ed72e52b361ccd97 |
| genomic_resource_original.yaml | 4.58 KB | bcc164b5705b4fa862d7ced6dd219009 |
| statistics/ |