TF_ChIP-seq_ENCSR000EBZ
TF_ChIP-seq ENCSR000EBZ [biosample_summary="Homo sapiens H1" and target="JUND"]
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| Id: | TF_ChIP-seq/ENCSR000EBZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EBZ [biosamplesummary="Homo sapiens H1" and target="JUND"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN382QTS|/analyses/ENCAN382QTS/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF632FAF|/files/ENCFF632FAF/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19959853 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting JUND-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF632FAF|/files/ENCFF632FAF/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF632FAF|/files/ENCFF632FAF/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.14. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EBZ | float |
TF_ChIP-seq_ENCSR000EBZ |
TF_ChIP-seq ENCSR000EBZ [biosample_summary="Homo sapiens H1" and target="JUND"]
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[6.21, 465] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF760AQQ.bed.gz | 228.07 KB | 66b5655b705d61f43eef9a3327e5df2b |
| ENCFF760AQQ.bed.gz.dvc | 100.0 B | fac1ce072fa4b24449847811ced524f5 |
| ENCFF760AQQ.tabix.bed.gz | 154.3 KB | d7ebcb8844d2a911f1a4f6cd03bd789b |
| ENCFF760AQQ.tabix.bed.gz.dvc | 106.0 B | dd0945fc0348b7bb4f11864cb8ca5cb3 |
| ENCFF760AQQ.tabix.bed.gz.tbi | 105.17 KB | 9c0cce4a469eabe0416750849bbd748d |
| ENCFF760AQQ.tabix.bed.gz.tbi.dvc | 110.0 B | f7213f5b20f916e91c4116b13600eba6 |
| genomic_resource.yaml | 3.13 KB | 4b5bae28a8e9ef4325660a0fc12efc1f |
| genomic_resource_original.yaml | 3.04 KB | 22038a6a28a7cfb63ed4d25fe31d6ede |
| statistics/ |