TF_ChIP-seq_ENCSR000EBY
TF_ChIP-seq ENCSR000EBY [biosample_summary="Homo sapiens H1" and target="MYC"]
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| Id: | TF_ChIP-seq/ENCSR000EBY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EBY [biosamplesummary="Homo sapiens H1" and target="MYC"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF392JJN|/files/ENCFF392JJN/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN638CDI|/analyses/ENCAN638CDI/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF503VEU|/files/ENCFF503VEU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17379144 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MYC-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF503VEU|/files/ENCFF503VEU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF503VEU|/files/ENCFF503VEU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 4.81. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF705LAV|/files/ENCFF705LAV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF705LAV|/files/ENCFF705LAV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.21. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EBY | float |
TF_ChIP-seq_ENCSR000EBY |
TF_ChIP-seq ENCSR000EBY [biosample_summary="Homo sapiens H1" and target="MYC"]
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[5.52, 227] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF392JJN.bed.gz | 118.25 KB | 2eb2174f94c3d036591290de643646ff |
| ENCFF392JJN.bed.gz.dvc | 100.0 B | b6078c5e6a262cc75842399e9545ba1d |
| ENCFF392JJN.tabix.bed.gz | 77.44 KB | 3f3ac1ed497d601ed56749d7ddb9f060 |
| ENCFF392JJN.tabix.bed.gz.dvc | 105.0 B | 2467b063668c68395a25a7ec4ba15461 |
| ENCFF392JJN.tabix.bed.gz.tbi | 58.08 KB | 7e93282b370773e0de01898125cf9929 |
| ENCFF392JJN.tabix.bed.gz.tbi.dvc | 109.0 B | 4fa500440e102129a1c76bfef40f2703 |
| genomic_resource.yaml | 4.61 KB | fa0ec2c5deb13b8808b9d7d1020715e3 |
| genomic_resource_original.yaml | 4.52 KB | 14c7f8766ac8becbcae1c097fea24074 |
| statistics/ |