TF_ChIP-seq_ENCSR000EBS
TF_ChIP-seq ENCSR000EBS [biosample_summary="Homo sapiens H1" and target="MAFK"]
×
| Id: | TF_ChIP-seq/ENCSR000EBS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EBS [biosamplesummary="Homo sapiens H1" and target="MAFK"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN646CVA|/analyses/ENCAN646CVA/} has in progress subobject document {831cefed-4f4c-490c-88f3-c88ceb78c4e7|/documents/831cefed-4f4c-490c-88f3-c88ceb78c4e7/} audit_internal_action: Released analysis {ENCAN646CVA|/analyses/ENCAN646CVA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF213MOW|/files/ENCFF213MOW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19356759 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MAFK-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF038QUO|/files/ENCFF038QUO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF038QUO|/files/ENCFF038QUO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.87. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EBS | float |
TF_ChIP-seq_ENCSR000EBS |
TF_ChIP-seq ENCSR000EBS [biosample_summary="Homo sapiens H1" and target="MAFK"]
|
|
[5.63, 600] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF710YJK.bed.gz | 235.72 KB | 8cc2c81282d02406ee3bc3e9ec250eff |
| ENCFF710YJK.bed.gz.dvc | 100.0 B | 5a39f28511435f312f90fb90ef938579 |
| ENCFF710YJK.tabix.bed.gz | 160.26 KB | 5784d68b6246a6cc2f73f1ecddd18179 |
| ENCFF710YJK.tabix.bed.gz.dvc | 106.0 B | b682dc103855c012b0063a8680e317fd |
| ENCFF710YJK.tabix.bed.gz.tbi | 115.07 KB | 4deb4fef5da0d30ce6a46804f44024c7 |
| ENCFF710YJK.tabix.bed.gz.tbi.dvc | 110.0 B | 584365377ac50c120afed4044646aa42 |
| genomic_resource.yaml | 3.36 KB | 02bad6797823783efdd800a414bd7fbd |
| genomic_resource_original.yaml | 3.27 KB | edbde5cc1b31bf48898d1138098b71ab |
| statistics/ |