type: position_score
table:
  filename: ENCFF519DDH.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000EBK
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000EBK [TISSUE: Homo sapiens GM19193, TARGET: POLR2A]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2,\
    \ Rep 3, Rep 4\n\n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n\
    **audit\\_error**: Processed alignments file {ENCFF660FZH|/files/ENCFF660FZH/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 2857272 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ POLR2A-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\\
    _error**: Processed alignments file {ENCFF835RFW|/files/ENCFF835RFW/} processed\
    \ by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 4556545 usable fragments. The\
    \ minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ POLR2A-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\\
    _error**: Processed alignments file {ENCFF169HFV|/files/ENCFF169HFV/} processed\
    \ by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 3626200 usable fragments. The\
    \ minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ POLR2A-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\\
    _internal\\_action**: Released analysis {ENCAN286CLG|/analyses/ENCAN286CLG/} has\
    \ in progress subobject document {a4cdfb8a-af24-4c92-8fd3-6071701f4564|/documents/a4cdfb8a-af24-4c92-8fd3-6071701f4564/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN286CLG|/analyses/ENCAN286CLG/}\
    \ has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_not\\_compliant**: Processed alignments file {ENCFF071IGH|/files/ENCFF071IGH/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 5906971 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ POLR2A-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EBK
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens GM19193
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0005351/
    perturbed: false
    doi: 10.17989/ENCSR000EBK
    date_created: '2013-12-12T07:01:34.760751+00:00'
    date_released: '2011-10-29'
    submitter_comment: ''
    target: POLR2A
