TF_ChIP-seq_ENCSR000EAR
TF_ChIP-seq ENCSR000EAR [biosample_summary="Homo sapiens GM15510" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR000EAR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EAR [biosamplesummary="Homo sapiens GM15510" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2, Rep 3 summary: output_type: IDR thresholded peaks audit_error: Processed alignments file {ENCFF442EYG|/files/ENCFF442EYG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 3325148 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_error: Processed alignments file {ENCFF345SJZ|/files/ENCFF345SJZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 4226251 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_error: Processed alignments file {ENCFF004ZNU|/files/ENCFF004ZNU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 2980337 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_internal_action: Released analysis {ENCAN094HPV|/analyses/ENCAN094HPV/} has in progress subobject document {ea3691dd-9a6a-470c-af1a-3e585d1a7867|/documents/ea3691dd-9a6a-470c-af1a-3e585d1a7867/} audit_internal_action: Released analysis {ENCAN094HPV|/analyses/ENCAN094HPV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF129APS|/files/ENCFF129APS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.16 and a self consistency ratio of 2.25. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EAR | float |
TF_ChIP-seq_ENCSR000EAR |
TF_ChIP-seq ENCSR000EAR [biosample_summary="Homo sapiens GM15510" and target="POLR2A"]
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[2.01, 632] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF129APS.bed.gz | 451.58 KB | 583e9a936c02d6ebad72ae8815186dc6 |
| ENCFF129APS.bed.gz.dvc | 100.0 B | 39143d2aba2274404ff49580b2986591 |
| ENCFF129APS.tabix.bed.gz | 308.72 KB | a440808361fea0a06e3f80196702c077 |
| ENCFF129APS.tabix.bed.gz.dvc | 106.0 B | 6c118bb2dc07756d6329be025a772b23 |
| ENCFF129APS.tabix.bed.gz.tbi | 116.32 KB | 6dd6c3d4e33a3bc214a5fbd9671796c0 |
| ENCFF129APS.tabix.bed.gz.tbi.dvc | 110.0 B | 73a40e4f003111cb2aff1541b2288998 |
| genomic_resource.yaml | 3.62 KB | b9ca70e34f7f7639bb06d0c2fd204a46 |
| genomic_resource_original.yaml | 3.52 KB | c73b6eaa483b4f1e1cb32b63cd209e5b |
| statistics/ |