TF_ChIP-seq_ENCSR000EAC
TF_ChIP-seq ENCSR000EAC [biosample_summary="Homo sapiens GM12878" and target="RAD21"]
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| Id: | TF_ChIP-seq/ENCSR000EAC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EAC [biosamplesummary="Homo sapiens GM12878" and target="RAD21"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN143SUO|/analyses/ENCAN143SUO/} has in progress subobject document {d8111663-b97d-4cd4-9978-7a2382bce89b|/documents/d8111663-b97d-4cd4-9978-7a2382bce89b/} audit_internal_action: Released analysis {ENCAN143SUO|/analyses/ENCAN143SUO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF644LKJ|/files/ENCFF644LKJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13652349 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RAD21-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF359ZRR|/files/ENCFF359ZRR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13652398 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RAD21-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF834GOT|/files/ENCFF834GOT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.74 and a self consistency ratio of 3.37. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EAC | float |
TF_ChIP-seq_ENCSR000EAC |
TF_ChIP-seq ENCSR000EAC [biosample_summary="Homo sapiens GM12878" and target="RAD21"]
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[4.23, 334] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF834GOT.bed.gz | 562.67 KB | 0edfbb44ab702e845e4225817f5f0512 |
| ENCFF834GOT.bed.gz.dvc | 100.0 B | 41aab04838cbc2c74ac08e7baa4a0c79 |
| ENCFF834GOT.tabix.bed.gz | 407.65 KB | e382aba08bd1f197219db399c069a93c |
| ENCFF834GOT.tabix.bed.gz.dvc | 106.0 B | 31dd75d1603c7472f74c4344efe32a85 |
| ENCFF834GOT.tabix.bed.gz.tbi | 239.14 KB | 5f429e76a936b1f53faf5ea90647f4f6 |
| ENCFF834GOT.tabix.bed.gz.tbi.dvc | 110.0 B | da5b23c0afbe435d47745d4507ce5646 |
| genomic_resource.yaml | 3.11 KB | d25dd77e0c201375afd54721841ded77 |
| genomic_resource_original.yaml | 3.01 KB | 4453779d0858a3238abc5dbec175385c |
| statistics/ |