TF_ChIP-seq_ENCSR000EAA
TF_ChIP-seq ENCSR000EAA [biosample_summary="Homo sapiens GM12878" and target="WRNIP1"]
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| Id: | TF_ChIP-seq/ENCSR000EAA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EAA [biosamplesummary="Homo sapiens GM12878" and target="WRNIP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN085DLI|/analyses/ENCAN085DLI/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF172BTO|/files/ENCFF172BTO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14121961 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting WRNIP1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF417TCH|/files/ENCFF417TCH/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14256515 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting WRNIP1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF354MYM|/files/ENCFF354MYM/}, {ENCFF809ZOV|/files/ENCFF809ZOV/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.08 and a self consistency ratio of 15.70. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF277VDY|/files/ENCFF277VDY/}, {ENCFF528EPB|/files/ENCFF528EPB/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.08 and a self consistency ratio of 15.70. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EAA | float |
TF_ChIP-seq_ENCSR000EAA |
TF_ChIP-seq ENCSR000EAA [biosample_summary="Homo sapiens GM12878" and target="WRNIP1"]
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[6.96, 283] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF277VDY.bed.gz | 150.41 KB | 5e7d9db0cbef87de4528e14c15dfb940 |
| ENCFF277VDY.bed.gz.dvc | 100.0 B | 758c75c5e00ed831d9dc87e7d810f1f0 |
| ENCFF277VDY.tabix.bed.gz | 105.02 KB | 149b341a9e9f7b2b5c9ff66a1a4c776b |
| ENCFF277VDY.tabix.bed.gz.dvc | 106.0 B | 3f37209454a742fd22f513a196392da3 |
| ENCFF277VDY.tabix.bed.gz.tbi | 57.79 KB | f5bf6e143a4071ccd338818f4dc1c775 |
| ENCFF277VDY.tabix.bed.gz.tbi.dvc | 109.0 B | 959ed3a491a54fd140c30f05ddb54e9c |
| genomic_resource.yaml | 3.48 KB | fb124bc8ae2aec97780e292baf8b2021 |
| genomic_resource_original.yaml | 3.38 KB | 167a94ea0ff33dea961762a12df20e9a |
| statistics/ |