TF_ChIP-seq_ENCSR000DZZ
TF_ChIP-seq ENCSR000DZZ [biosample_summary="Homo sapiens GM12878" and target="TBP"]
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| Id: | TF_ChIP-seq/ENCSR000DZZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DZZ [biosamplesummary="Homo sapiens GM12878" and target="TBP"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF896UZB|/files/ENCFF896UZB/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN195QRQ|/analyses/ENCAN195QRQ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF987AWV|/files/ENCFF987AWV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15331321 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TBP-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF910NHM|/files/ENCFF910NHM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15105795 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TBP-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF571FGG|/files/ENCFF571FGG/}, {ENCFF896UZB|/files/ENCFF896UZB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.31 and a self consistency ratio of 9.71. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF268NXQ|/files/ENCFF268NXQ/}, {ENCFF383GJE|/files/ENCFF383GJE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.31 and a self consistency ratio of 9.71. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DZZ | float |
TF_ChIP-seq_ENCSR000DZZ |
TF_ChIP-seq ENCSR000DZZ [biosample_summary="Homo sapiens GM12878" and target="TBP"]
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[6.53, 662] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF896UZB.bed.gz | 361.61 KB | 912cd305de68c2dc64c0e0e29b097a0d |
| ENCFF896UZB.bed.gz.dvc | 100.0 B | af0700fa7529aaeb2cc78cbbead83fbc |
| ENCFF896UZB.tabix.bed.gz | 265.78 KB | c0d5cbb3abf72ee524dc72b8ba4c18a5 |
| ENCFF896UZB.tabix.bed.gz.dvc | 106.0 B | dc212236f770191729fbe454a901fc19 |
| ENCFF896UZB.tabix.bed.gz.tbi | 111.32 KB | 99546945ac6e3f59fbd15048d1d9c684 |
| ENCFF896UZB.tabix.bed.gz.tbi.dvc | 110.0 B | bc17420c7ccc3b84640823da226bf5f6 |
| genomic_resource.yaml | 3.65 KB | 0d528d2e11dff954324547ec04adc780 |
| genomic_resource_original.yaml | 3.56 KB | b8d3c18806c6ed019c79779697954e40 |
| statistics/ |