TF_ChIP-seq_ENCSR000DZU
TF_ChIP-seq ENCSR000DZU [biosample_summary="Homo sapiens GM12878" and target="USF2"]
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| Id: | TF_ChIP-seq/ENCSR000DZU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DZU [biosamplesummary="Homo sapiens GM12878" and target="USF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN405QMO|/analyses/ENCAN405QMO/} has in progress subobject document {9a074c7c-481c-4806-a97b-d514be685f50|/documents/9a074c7c-481c-4806-a97b-d514be685f50/} audit_internal_action: Released analysis {ENCAN405QMO|/analyses/ENCAN405QMO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF977QBD|/files/ENCFF977QBD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16400329 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting USF2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF213IWO|/files/ENCFF213IWO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13888550 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting USF2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF196JQW|/files/ENCFF196JQW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.11 and a self consistency ratio of 3.76. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DZU | float |
TF_ChIP-seq_ENCSR000DZU |
TF_ChIP-seq ENCSR000DZU [biosample_summary="Homo sapiens GM12878" and target="USF2"]
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[5.67, 533] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF196JQW.bed.gz | 77.2 KB | 9e23ce47bbd7cb879780a294a61071f8 |
| ENCFF196JQW.bed.gz.dvc | 99.0 B | b70d32d94b76164799bb066af1d43d2f |
| ENCFF196JQW.tabix.bed.gz | 54.54 KB | de4de5cfb07e53e0364175c540270fa6 |
| ENCFF196JQW.tabix.bed.gz.dvc | 105.0 B | c4c65bd3d6eb984cf51cf281a305ed2c |
| ENCFF196JQW.tabix.bed.gz.tbi | 45.3 KB | 5a0a449f1310bedec12b5c45be6ed4e0 |
| ENCFF196JQW.tabix.bed.gz.tbi.dvc | 109.0 B | 218d896a4ab8ce77615d7a3530a61bfc |
| genomic_resource.yaml | 3.1 KB | ff7b604f6fd5e01a22134f3acb7b8749 |
| genomic_resource_original.yaml | 3.0 KB | 88969f4a71234ae3dfd85ec0d6926c13 |
| statistics/ |