TF_ChIP-seq_ENCSR000DZS
TF_ChIP-seq ENCSR000DZS [biosample_summary="Homo sapiens GM12878" and target="BRCA1"]
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| Id: | TF_ChIP-seq/ENCSR000DZS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DZS [biosamplesummary="Homo sapiens GM12878" and target="BRCA1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF005JKU|/files/ENCFF005JKU/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN432HAZ|/analyses/ENCAN432HAZ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF651OUX|/files/ENCFF651OUX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14261745 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting BRCA1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF365KGA|/files/ENCFF365KGA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18898081 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting BRCA1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF003ZGU|/files/ENCFF003ZGU/}, {ENCFF005JKU|/files/ENCFF005JKU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 3.34 and a self consistency ratio of 1.84. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF794VJN|/files/ENCFF794VJN/}, {ENCFF616FBI|/files/ENCFF616FBI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 3.34 and a self consistency ratio of 1.84. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DZS | float |
TF_ChIP-seq_ENCSR000DZS |
TF_ChIP-seq ENCSR000DZS [biosample_summary="Homo sapiens GM12878" and target="BRCA1"]
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[6.34, 606] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF005JKU.bed.gz | 35.49 KB | 075125a01ccc17f057d20302ca2b4036 |
| ENCFF005JKU.bed.gz.dvc | 99.0 B | 539ceea162e5961ff9641979c2c86fac |
| ENCFF005JKU.tabix.bed.gz | 24.25 KB | 5791f275b153040d301c639fa7fd691e |
| ENCFF005JKU.tabix.bed.gz.dvc | 105.0 B | 8a0487c378ee9d87496225f49f845a9a |
| ENCFF005JKU.tabix.bed.gz.tbi | 21.09 KB | b7f62ad4c48303dc691744cd6fff776d |
| ENCFF005JKU.tabix.bed.gz.tbi.dvc | 109.0 B | 25badd09721a73d4f9a3a50ce9b38026 |
| genomic_resource.yaml | 3.66 KB | fb11767458e2fef59d467aca0707dcae |
| genomic_resource_original.yaml | 3.56 KB | 401c5afdd201b62df78f110d43f81c92 |
| statistics/ |