TF_ChIP-seq_ENCSR000DZR
TF_ChIP-seq ENCSR000DZR [biosample_summary="Homo sapiens GM12878" and target="CHD2"]
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| Id: | TF_ChIP-seq/ENCSR000DZR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DZR [biosamplesummary="Homo sapiens GM12878" and target="CHD2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN547TAA|/analyses/ENCAN547TAA/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF848RCO|/files/ENCFF848RCO/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 2.13 and a self consistency ratio of 2.23. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF712GLE|/files/ENCFF712GLE/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 2.13 and a self consistency ratio of 2.23. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Processed alignments file {ENCFF760ZDH|/files/ENCFF760ZDH/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12857161 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CHD2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF450UXL|/files/ENCFF450UXL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16726958 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CHD2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DZR | float |
TF_ChIP-seq_ENCSR000DZR |
TF_ChIP-seq ENCSR000DZR [biosample_summary="Homo sapiens GM12878" and target="CHD2"]
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[6.32, 709] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF712GLE.bed.gz | 288.97 KB | 0830d755f4ca94b216c9c4277888ad5a |
| ENCFF712GLE.bed.gz.dvc | 100.0 B | ed605418385a2ab1fd9ed312e2836d5f |
| ENCFF712GLE.tabix.bed.gz | 212.02 KB | cfb0f6bb59e0045860823683f0454217 |
| ENCFF712GLE.tabix.bed.gz.dvc | 106.0 B | 80e47075a7a83531911e36aa1a41a5f8 |
| ENCFF712GLE.tabix.bed.gz.tbi | 104.14 KB | 65a1995b35c211f3469e43f4765ce3fb |
| ENCFF712GLE.tabix.bed.gz.tbi.dvc | 110.0 B | eea3d769d6ba66f8fc26df04472b8c3f |
| genomic_resource.yaml | 3.41 KB | a02941a6318c15b314c7babe59e6f97a |
| genomic_resource_original.yaml | 3.32 KB | e5f48e33827b0f1bc7a234af3060c1d6 |
| statistics/ |