TF_ChIP-seq_ENCSR000DZO
TF_ChIP-seq ENCSR000DZO [biosample_summary="Homo sapiens GM12878" and target="NRF1"]
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| Id: | TF_ChIP-seq/ENCSR000DZO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DZO [biosamplesummary="Homo sapiens GM12878" and target="NRF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN337TGS|/analyses/ENCAN337TGS/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF652BRY|/files/ENCFF652BRY/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF910PTH|/files/ENCFF910PTH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10641025 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NRF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF910PTH|/files/ENCFF910PTH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF910PTH|/files/ENCFF910PTH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.67. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DZO | float |
TF_ChIP-seq_ENCSR000DZO |
TF_ChIP-seq ENCSR000DZO [biosample_summary="Homo sapiens GM12878" and target="NRF1"]
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[5.92, 402] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF652BRY.bed.gz | 87.17 KB | 074167810e21167ebe5514044b7a9555 |
| ENCFF652BRY.bed.gz.dvc | 99.0 B | 29c3b4be53625310e912c480a50db730 |
| ENCFF652BRY.tabix.bed.gz | 62.66 KB | d8c5a67c974ac318db079db2c02a1d9c |
| ENCFF652BRY.tabix.bed.gz.dvc | 105.0 B | 218366676144d2247d2f03c6772e761f |
| ENCFF652BRY.tabix.bed.gz.tbi | 49.48 KB | bfa8441dd08a17e2707790cead3223dd |
| ENCFF652BRY.tabix.bed.gz.tbi.dvc | 109.0 B | 620169c39c17c40c6c39fff628ce29e2 |
| genomic_resource.yaml | 3.33 KB | 11f136c020700ed7e849e190dcb96a6c |
| genomic_resource_original.yaml | 3.24 KB | 50b5eab04bdc572d9f929824ceed765d |
| statistics/ |