TF_ChIP-seq_ENCSR000DZI
TF_ChIP-seq ENCSR000DZI [biosample_summary="Homo sapiens GM12878" and target="MXI1"]
×
| Id: | TF_ChIP-seq/ENCSR000DZI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DZI [biosamplesummary="Homo sapiens GM12878" and target="MXI1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN567JJO|/analyses/ENCAN567JJO/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF387QOE|/files/ENCFF387QOE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15896963 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MXI1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF287GWT|/files/ENCFF287GWT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF287GWT|/files/ENCFF287GWT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.90. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DZI | float |
TF_ChIP-seq_ENCSR000DZI |
TF_ChIP-seq ENCSR000DZI [biosample_summary="Homo sapiens GM12878" and target="MXI1"]
|
|
[8.36, 538] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF079ZWK.bed.gz | 408.68 KB | 6cacbee975f59501030c8b8587227808 |
| ENCFF079ZWK.bed.gz.dvc | 100.0 B | d6549a35148fd045f1f178f61f5d098e |
| ENCFF079ZWK.tabix.bed.gz | 308.56 KB | 9a218ae9aac93ea06b6d3ecb12dbe8ba |
| ENCFF079ZWK.tabix.bed.gz.dvc | 106.0 B | ef00db1e8371935d39195cd196c4df77 |
| ENCFF079ZWK.tabix.bed.gz.tbi | 122.8 KB | 0b1b0117624b7f277077363af47c7307 |
| ENCFF079ZWK.tabix.bed.gz.tbi.dvc | 110.0 B | 724a2c4c4d121c7c882305441627899d |
| genomic_resource.yaml | 3.14 KB | 3b6d48ddde4d1d3c61634184128872c1 |
| genomic_resource_original.yaml | 3.04 KB | 5d10957682d956cb72e2a9f1ecc0017d |
| statistics/ |