TF_ChIP-seq_ENCSR000DZE
TF_ChIP-seq ENCSR000DZE [biosample_summary="Homo sapiens GM12878" and target="CHD1"]
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| Id: | TF_ChIP-seq/ENCSR000DZE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DZE [biosamplesummary="Homo sapiens GM12878" and target="CHD1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN663GHT|/analyses/ENCAN663GHT/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF343GPD|/files/ENCFF343GPD/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15311031 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CHD1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF047BBR|/files/ENCFF047BBR/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15890801 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CHD1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF273ULT|/files/ENCFF273ULT/}, {ENCFF924GMH|/files/ENCFF924GMH/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.71 and a self consistency ratio of 22.95. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF058AIB|/files/ENCFF058AIB/}, {ENCFF177YDP|/files/ENCFF177YDP/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.71 and a self consistency ratio of 22.95. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DZE | float |
TF_ChIP-seq_ENCSR000DZE |
TF_ChIP-seq ENCSR000DZE [biosample_summary="Homo sapiens GM12878" and target="CHD1"]
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[6.98, 399] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF273ULT.bed.gz | 170.16 KB | cce4272ca16424b132c0f8a5bb7ad40f |
| ENCFF273ULT.bed.gz.dvc | 100.0 B | 763ea3b63b498c3b8d5d9fb2082af445 |
| ENCFF273ULT.tabix.bed.gz | 122.81 KB | bb48b465b8f8fd5541e75ed5278fd2d7 |
| ENCFF273ULT.tabix.bed.gz.dvc | 106.0 B | ae995864d0c742672090b2244ced4ef0 |
| ENCFF273ULT.tabix.bed.gz.tbi | 57.6 KB | 23c8d2ebf99dc463c6213c31cc931b22 |
| ENCFF273ULT.tabix.bed.gz.tbi.dvc | 109.0 B | 63728d7769d4ff31970f7691553bc9a1 |
| genomic_resource.yaml | 3.47 KB | e37fa49e8f64d27dc8c3ec5481418c29 |
| genomic_resource_original.yaml | 3.37 KB | a561d7c38b513daa00f9cad3eb1f7dd8 |
| statistics/ |