TF_ChIP-seq_ENCSR000DZD
TF_ChIP-seq ENCSR000DZD [biosample_summary="Homo sapiens GM12878" and target="EP300"]
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| Id: | TF_ChIP-seq/ENCSR000DZD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DZD [biosamplesummary="Homo sapiens GM12878" and target="EP300"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN809APE|/analyses/ENCAN809APE/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF865UDD|/files/ENCFF865UDD/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF036AJQ|/files/ENCFF036AJQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18462028 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EP300-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF881THF|/files/ENCFF881THF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16340795 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EP300-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF696CNS|/files/ENCFF696CNS/}, {ENCFF865UDD|/files/ENCFF865UDD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.43 and a self consistency ratio of 16.99. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF771MIM|/files/ENCFF771MIM/}, {ENCFF905BUH|/files/ENCFF905BUH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.43 and a self consistency ratio of 16.99. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DZD | float |
TF_ChIP-seq_ENCSR000DZD |
TF_ChIP-seq ENCSR000DZD [biosample_summary="Homo sapiens GM12878" and target="EP300"]
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[7.1, 483] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF865UDD.bed.gz | 339.04 KB | 80e030ed5a3ffc5232fc1fceee48f045 |
| ENCFF865UDD.bed.gz.dvc | 100.0 B | 03638d1b42e1346b19d5ca1abff8da13 |
| ENCFF865UDD.tabix.bed.gz | 241.18 KB | 502ec39b6d37d93bcc6d41868b38f8a8 |
| ENCFF865UDD.tabix.bed.gz.dvc | 106.0 B | 17e6cd78972e6ad4441d8d7324a8f735 |
| ENCFF865UDD.tabix.bed.gz.tbi | 118.67 KB | d25afb4478511605dbabe0f887173cb6 |
| ENCFF865UDD.tabix.bed.gz.tbi.dvc | 110.0 B | 9b49f4f0157ac9d1a5b1f28fd763100d |
| genomic_resource.yaml | 3.66 KB | 3b2d678c03115fd90708ad277653b150 |
| genomic_resource_original.yaml | 3.57 KB | 4be550dfa338733a5331cf398ed69681 |
| statistics/ |