TF_ChIP-seq_ENCSR000DZB
TF_ChIP-seq ENCSR000DZB [biosample_summary="Homo sapiens GM12878" and target="ELK1"]
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| Id: | TF_ChIP-seq/ENCSR000DZB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DZB [biosamplesummary="Homo sapiens GM12878" and target="ELK1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF432AQP|/files/ENCFF432AQP/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN205HIW|/analyses/ENCAN205HIW/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF784XUE|/files/ENCFF784XUE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18637934 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ELK1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF432AQP|/files/ENCFF432AQP/}, {ENCFF350TKU|/files/ENCFF350TKU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.32 and a self consistency ratio of 7.17. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF264FWY|/files/ENCFF264FWY/}, {ENCFF173WFH|/files/ENCFF173WFH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.32 and a self consistency ratio of 7.17. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DZB | float |
TF_ChIP-seq_ENCSR000DZB |
TF_ChIP-seq ENCSR000DZB [biosample_summary="Homo sapiens GM12878" and target="ELK1"]
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[7.63, 601] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF432AQP.bed.gz | 143.15 KB | fbb563270ff1dc6948f5e8b396636079 |
| ENCFF432AQP.bed.gz.dvc | 100.0 B | 26f94f8b20f9eeb9551deb3b0da54d65 |
| ENCFF432AQP.tabix.bed.gz | 101.07 KB | 866e104cdc09bc5dbfe29376066eecf0 |
| ENCFF432AQP.tabix.bed.gz.dvc | 106.0 B | 44aa03495313b3ef12f2cfb9c000f4f0 |
| ENCFF432AQP.tabix.bed.gz.tbi | 62.38 KB | 2ab20c675d7b00cec46962ec0040c674 |
| ENCFF432AQP.tabix.bed.gz.tbi.dvc | 109.0 B | a4937585662929b45735e8f987db9f6d |
| genomic_resource.yaml | 3.16 KB | 0ed117c3d1c9e988d8fc547a83db9966 |
| genomic_resource_original.yaml | 3.06 KB | ffb599ba2ad3b3ea280e5666b1c0e8fc |
| statistics/ |