TF_ChIP-seq_ENCSR000DYU
TF_ChIP-seq ENCSR000DYU [biosample_summary="Homo sapiens GM12878" and target="SREBF1"]
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| Id: | TF_ChIP-seq/ENCSR000DYU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DYU [biosamplesummary="Homo sapiens GM12878" and target="SREBF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN786ORB|/analyses/ENCAN786ORB/} has in progress subobject document {03c1bfbb-e736-4549-ae24-dd1d91a8a829|/documents/03c1bfbb-e736-4549-ae24-dd1d91a8a829/} audit_internal_action: Released analysis {ENCAN786ORB|/analyses/ENCAN786ORB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF398RFO|/files/ENCFF398RFO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF398RFO|/files/ENCFF398RFO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.18. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF465NOY|/files/ENCFF465NOY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF465NOY|/files/ENCFF465NOY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.72. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DYU | float |
TF_ChIP-seq_ENCSR000DYU |
TF_ChIP-seq ENCSR000DYU [biosample_summary="Homo sapiens GM12878" and target="SREBF1"]
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[6.99, 466] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF397YRO.bed.gz | 65.36 KB | 32cd5d170c18b4048a04c376083f9a53 |
| ENCFF397YRO.bed.gz.dvc | 99.0 B | 2e2be9f237083b51d2bc683dd5e0b03f |
| ENCFF397YRO.tabix.bed.gz | 44.25 KB | d1665a9f92b725eebbddd184881c63cc |
| ENCFF397YRO.tabix.bed.gz.dvc | 105.0 B | f15f234c3903f4b7c6c61c3f6eca29c8 |
| ENCFF397YRO.tabix.bed.gz.tbi | 36.36 KB | 4a7a11309992e4b9d4638825b37782db |
| ENCFF397YRO.tabix.bed.gz.tbi.dvc | 109.0 B | bbca0e2ceb6643bc88dbe23c6ec49bd7 |
| genomic_resource.yaml | 4.19 KB | f92145228050d6c2acde20480e1b706c |
| genomic_resource_original.yaml | 4.1 KB | 4d150a61f0e6536889f6c185e48b4bec |
| statistics/ |