TF_ChIP-seq_ENCSR000DYT
TF_ChIP-seq ENCSR000DYT [biosample_summary="Homo sapiens GM12878" and target="SREBF2"]
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| Id: | TF_ChIP-seq/ENCSR000DYT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DYT [biosamplesummary="Homo sapiens GM12878" and target="SREBF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN767EQF|/analyses/ENCAN767EQF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN767EQF|/analyses/ENCAN767EQF/} has in progress subobject document {90c749ae-2227-4931-8535-ef8839596ee1|/documents/90c749ae-2227-4931-8535-ef8839596ee1/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF594EHC|/files/ENCFF594EHC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF594EHC|/files/ENCFF594EHC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.68. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF756UDR|/files/ENCFF756UDR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF756UDR|/files/ENCFF756UDR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DYT | float |
TF_ChIP-seq_ENCSR000DYT |
TF_ChIP-seq ENCSR000DYT [biosample_summary="Homo sapiens GM12878" and target="SREBF2"]
|
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[7.26, 652] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF896MPE.bed.gz | 30.39 KB | 07d5177657808e4aa8f347af97815611 |
| ENCFF896MPE.bed.gz.dvc | 99.0 B | d1350ff7c34205eea75970f02ede0c66 |
| ENCFF896MPE.tabix.bed.gz | 20.57 KB | ab550f6c157f4c1e7ccd104134a6ece9 |
| ENCFF896MPE.tabix.bed.gz.dvc | 105.0 B | 7bfbedfdbc94af81623997b411fd6a60 |
| ENCFF896MPE.tabix.bed.gz.tbi | 19.06 KB | 3002578b447dde159769f334ec964104 |
| ENCFF896MPE.tabix.bed.gz.tbi.dvc | 109.0 B | d2d99c6e33f54a61f25f0f3c37dd8e04 |
| genomic_resource.yaml | 4.19 KB | 90fc6c2fd01aef42cd058cb930536ec8 |
| genomic_resource_original.yaml | 4.1 KB | 5466f4b9f9f1a5b1a8d0d60f53d101c5 |
| statistics/ |