TF_ChIP-seq_ENCSR000DYR
TF_ChIP-seq ENCSR000DYR [biosample_summary="Homo sapiens GM12878" and target="CUX1"]
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| Id: | TF_ChIP-seq/ENCSR000DYR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DYR [biosamplesummary="Homo sapiens GM12878" and target="CUX1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN456KNT|/analyses/ENCAN456KNT/} has in progress subobject document {a657444c-1608-4400-af57-5c3c53baadcd|/documents/a657444c-1608-4400-af57-5c3c53baadcd/} audit_internal_action: Released analysis {ENCAN456KNT|/analyses/ENCAN456KNT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF451AII|/files/ENCFF451AII/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 7.10 and a self consistency ratio of 4.34. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Processed alignments file {ENCFF040UPE|/files/ENCFF040UPE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14791165 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CUX1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DYR | float |
TF_ChIP-seq_ENCSR000DYR |
TF_ChIP-seq ENCSR000DYR [biosample_summary="Homo sapiens GM12878" and target="CUX1"]
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[8.21, 315] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF451AII.bed.gz | 134.33 KB | ac06c81de51c9e1cbc26954bba14e245 |
| ENCFF451AII.bed.gz.dvc | 100.0 B | 3c5e38502678d56fea556b2f1aec3b3e |
| ENCFF451AII.tabix.bed.gz | 94.11 KB | ca82d773ea8bf1c28e72e447a34333d7 |
| ENCFF451AII.tabix.bed.gz.dvc | 105.0 B | 566ba187edc902ce97ee674465d7157b |
| ENCFF451AII.tabix.bed.gz.tbi | 56.53 KB | 8a1195dfc80c6ff72759733ed704bd2c |
| ENCFF451AII.tabix.bed.gz.tbi.dvc | 109.0 B | c56f285a2e270c29d51f7c866cfbb1b1 |
| genomic_resource.yaml | 2.61 KB | 38fddf1ae1af90398536ce2801379093 |
| genomic_resource_original.yaml | 2.52 KB | 819c07b664f67a4f92ac8233b784a531 |
| statistics/ |