TF_ChIP-seq_ENCSR000DYQ
TF_ChIP-seq ENCSR000DYQ [biosample_summary="Homo sapiens GM12878" and target="ESRRA"]
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| Id: | TF_ChIP-seq/ENCSR000DYQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DYQ [biosamplesummary="Homo sapiens GM12878" and target="ESRRA"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF722LJP|/files/ENCFF722LJP/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN014PGO|/analyses/ENCAN014PGO/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF403OML|/files/ENCFF403OML/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19296739 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ESRRA-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF403OML|/files/ENCFF403OML/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF403OML|/files/ENCFF403OML/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.43. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DYQ | float |
TF_ChIP-seq_ENCSR000DYQ |
TF_ChIP-seq ENCSR000DYQ [biosample_summary="Homo sapiens GM12878" and target="ESRRA"]
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[6.64, 386] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF722LJP.bed.gz | 91.17 KB | 1bf7b0d14a0396216a83bea7edfd8bd1 |
| ENCFF722LJP.bed.gz.dvc | 99.0 B | 16be9f8e2e331fab254d4040fe41ca14 |
| ENCFF722LJP.tabix.bed.gz | 62.92 KB | 5460dabf9a7038ee6063b2c4048396e6 |
| ENCFF722LJP.tabix.bed.gz.dvc | 105.0 B | 28815b3665e8429d368240924b61dead |
| ENCFF722LJP.tabix.bed.gz.tbi | 44.47 KB | ca4f8e0661e7f6f65f0897d37666ae6a |
| ENCFF722LJP.tabix.bed.gz.tbi.dvc | 109.0 B | 237996d5161a3ca8a625d654669a44fc |
| genomic_resource.yaml | 3.33 KB | b36b443da69e1a98684c2ccb3b552b3d |
| genomic_resource_original.yaml | 3.24 KB | 31160ca943b562fc1975628663b95cb4 |
| statistics/ |