TF_ChIP-seq_ENCSR000DYD
TF_ChIP-seq ENCSR000DYD [biosample_summary="Homo sapiens A549" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DYD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DYD [biosamplesummary="Homo sapiens A549" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN242UVN|/analyses/ENCAN242UVN/} has in progress subobject document {dcaaf40e-4e48-41c4-9a38-8e3ed7e8631f|/documents/dcaaf40e-4e48-41c4-9a38-8e3ed7e8631f/} audit_internal_action: Released analysis {ENCAN242UVN|/analyses/ENCAN242UVN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF285NOP|/files/ENCFF285NOP/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF285NOP|/files/ENCFF285NOP/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.59. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DYD | float |
TF_ChIP-seq_ENCSR000DYD |
TF_ChIP-seq ENCSR000DYD [biosample_summary="Homo sapiens A549" and target="CTCF"]
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[5.38, 539] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF005MCX.bed.gz | 774.13 KB | 3bffa15f663dfdde4de9c618966ec9d0 |
| ENCFF005MCX.bed.gz.dvc | 100.0 B | c9d5caf02556a07ee49af13aee68098a |
| ENCFF005MCX.tabix.bed.gz | 554.19 KB | 7cd43d501b4c3df55c91bd3fb5b02dc9 |
| ENCFF005MCX.tabix.bed.gz.dvc | 106.0 B | fed87cd51fb220e02a43395926493285 |
| ENCFF005MCX.tabix.bed.gz.tbi | 291.21 KB | fceec594bca039108b44d568d3b15638 |
| ENCFF005MCX.tabix.bed.gz.tbi.dvc | 110.0 B | 68aa239ee71ca1c25226ac2bebf5bffb |
| genomic_resource.yaml | 2.87 KB | 568793673c478f5eb9e370fe57fe40c6 |
| genomic_resource_original.yaml | 2.77 KB | e973ace6d2e285f025758b9144905d81 |
| statistics/ |