TF_ChIP-seq_ENCSR000DYC
TF_ChIP-seq ENCSR000DYC [biosample_summary="Homo sapiens A549" and target="MYC"]
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| Id: | TF_ChIP-seq/ENCSR000DYC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DYC [biosamplesummary="Homo sapiens A549" and target="MYC"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN504RGZ|/analyses/ENCAN504RGZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN504RGZ|/analyses/ENCAN504RGZ/} has in progress subobject document {aee14b7a-227d-48e6-bcad-39f25f0482a2|/documents/aee14b7a-227d-48e6-bcad-39f25f0482a2/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF835LXV|/files/ENCFF835LXV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF835LXV|/files/ENCFF835LXV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.35. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF598BZD|/files/ENCFF598BZD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.08 and a self consistency ratio of 2.03. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DYC | float |
TF_ChIP-seq_ENCSR000DYC |
TF_ChIP-seq ENCSR000DYC [biosample_summary="Homo sapiens A549" and target="MYC"]
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[6.4, 318] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF598BZD.bed.gz | 173.71 KB | 37b0988bcf707c0b7f8a5dfd173443f9 |
| ENCFF598BZD.bed.gz.dvc | 100.0 B | a7f7cf8e18348d8f3018b5516010f901 |
| ENCFF598BZD.tabix.bed.gz | 124.44 KB | 46f3c5ee0a75b9e3f63df5250d4e18bc |
| ENCFF598BZD.tabix.bed.gz.dvc | 106.0 B | 9a6d5d32fe1ea8e32eea04e1f62c25a8 |
| ENCFF598BZD.tabix.bed.gz.tbi | 69.67 KB | 261e0c410d81ebde0e8c06b1df4fae7d |
| ENCFF598BZD.tabix.bed.gz.tbi.dvc | 109.0 B | 2a96792b8770c20a649d147616d518cd |
| genomic_resource.yaml | 3.4 KB | f800a6d784ca4e161db2af41121a018c |
| genomic_resource_original.yaml | 3.31 KB | 6e6c464c802c0514dd1b76cb2138f86c |
| statistics/ |