TF_ChIP-seq_ENCSR000DYB
TF_ChIP-seq ENCSR000DYB [biosample_summary="Homo sapiens WI38" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DYB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DYB [biosamplesummary="Homo sapiens WI38" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN975LTW|/analyses/ENCAN975LTW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN975LTW|/analyses/ENCAN975LTW/} has in progress subobject document {3daa3ca6-d3a3-45a0-8187-69238267a5f1|/documents/3daa3ca6-d3a3-45a0-8187-69238267a5f1/} audit_warning: Processed alignments file {ENCFF822DES|/files/ENCFF822DES/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 10250608 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF998YSJ|/files/ENCFF998YSJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 10558030 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF822DES|/files/ENCFF822DES/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF822DES|/files/ENCFF822DES/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.48. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF998YSJ|/files/ENCFF998YSJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF998YSJ|/files/ENCFF998YSJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.61. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DYB | float |
TF_ChIP-seq_ENCSR000DYB |
TF_ChIP-seq ENCSR000DYB [biosample_summary="Homo sapiens WI38" and target="CTCF"]
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[3.92, 348] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF127VTB.bed.gz | 478.76 KB | 50fa7d0442b391aeddb4b136d5ad5584 |
| ENCFF127VTB.bed.gz.dvc | 100.0 B | 898d86c1e917a2f90cdf0dc80e385710 |
| ENCFF127VTB.tabix.bed.gz | 377.38 KB | 37c2c1b19339ba86a69cd96ed2674006 |
| ENCFF127VTB.tabix.bed.gz.dvc | 106.0 B | 47ebd1bac66845dc199977414ba4653e |
| ENCFF127VTB.tabix.bed.gz.tbi | 212.07 KB | de5530bb7226b21c4feb24dd6c50cfcf |
| ENCFF127VTB.tabix.bed.gz.tbi.dvc | 110.0 B | f93de0c50b10c7f033f7d68d6e638322 |
| genomic_resource.yaml | 5.39 KB | b257729d57515e38d6722a9657abc3ad |
| genomic_resource_original.yaml | 5.29 KB | d15226aa0dae996f9b094b3157c3c828 |
| statistics/ |