TF_ChIP-seq_ENCSR000DXW
TF_ChIP-seq ENCSR000DXW [biosample_summary="Homo sapiens WERI-Rb-1" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DXW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DXW [biosamplesummary="Homo sapiens WERI-Rb-1" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF262ZOT|/files/ENCFF262ZOT/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN551TFS|/analyses/ENCAN551TFS/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF633OXE|/files/ENCFF633OXE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 9980453 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF925VPT|/files/ENCFF925VPT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10302573 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF633OXE|/files/ENCFF633OXE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DXW | float |
TF_ChIP-seq_ENCSR000DXW |
TF_ChIP-seq ENCSR000DXW [biosample_summary="Homo sapiens WERI-Rb-1" and target="CTCF"]
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[3.29, 479] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF262ZOT.bed.gz | 880.32 KB | bc7609823702456884e7fa15510e9683 |
| ENCFF262ZOT.bed.gz.dvc | 100.0 B | 804ff854877d366dbae4439b2c3cee0a |
| ENCFF262ZOT.tabix.bed.gz | 673.13 KB | c17070407dfe5a25f5c825cc230cb703 |
| ENCFF262ZOT.tabix.bed.gz.dvc | 106.0 B | fda3cc88c68d38275a1026c5f02bf965 |
| ENCFF262ZOT.tabix.bed.gz.tbi | 336.77 KB | 3c639a58778a67652aff6054b9d05c51 |
| ENCFF262ZOT.tabix.bed.gz.tbi.dvc | 110.0 B | 893374f6d0097700ec7f6ff3475dd1dd |
| genomic_resource.yaml | 3.5 KB | 67eb9fbfa91f78317e12c3107e87938c |
| genomic_resource_original.yaml | 3.4 KB | 9a8e3f11cbe7a53b6c6f792f214ead84 |
| statistics/ |