TF_ChIP-seq_ENCSR000DXD
TF_ChIP-seq ENCSR000DXD [biosample_summary="Homo sapiens epithelial cell of proximal tubule" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DXD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DXD [biosamplesummary="Homo sapiens epithelial cell of proximal tubule" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN919UFM|/analyses/ENCAN919UFM/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF192UQS|/files/ENCFF192UQS/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF033MWR|/files/ENCFF033MWR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14069674 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF693QLZ|/files/ENCFF693QLZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15838172 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF033MWR|/files/ENCFF033MWR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF033MWR|/files/ENCFF033MWR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.79. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF693QLZ|/files/ENCFF693QLZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF693QLZ|/files/ENCFF693QLZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.15. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DXD | float |
TF_ChIP-seq_ENCSR000DXD |
TF_ChIP-seq ENCSR000DXD [biosample_summary="Homo sapiens epithelial cell of proximal tubule" and target="CTCF"]
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[4.01, 637] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF192UQS.bed.gz | 949.78 KB | 7b7cd51c6b4a31a40abb6c043c950829 |
| ENCFF192UQS.bed.gz.dvc | 100.0 B | f65f8db82dab33790a676b08e0bc5ef1 |
| ENCFF192UQS.tabix.bed.gz | 727.9 KB | 8bb9d387a9c0b2b07b911c97d230e048 |
| ENCFF192UQS.tabix.bed.gz.dvc | 106.0 B | 2e86feafe3ec9662ec9f28f1d444e07f |
| ENCFF192UQS.tabix.bed.gz.tbi | 355.49 KB | 45fe31b886e81ae586785a475d29f5cc |
| ENCFF192UQS.tabix.bed.gz.tbi.dvc | 110.0 B | 4a92e0d2f47dca96da26b1bc959ef64e |
| genomic_resource.yaml | 5.21 KB | a85fb6396969f375e0d8a872d216e404 |
| genomic_resource_original.yaml | 5.09 KB | b07f928c08fc152ce695cf1f0a6d2238 |
| statistics/ |