TF_ChIP-seq_ENCSR000DWY
TF_ChIP-seq ENCSR000DWY [biosample_summary="Homo sapiens fibroblast of lung male adult (45 years)" and target="CTCF"]
×
| Id: | TF_ChIP-seq/ENCSR000DWY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DWY [biosamplesummary="Homo sapiens fibroblast of lung male adult (45 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (45 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN386SDI|/analyses/ENCAN386SDI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN386SDI|/analyses/ENCAN386SDI/} has in progress subobject document {33b99215-acad-47c1-a741-e025828c4dc5|/documents/33b99215-acad-47c1-a741-e025828c4dc5/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF303LCC|/files/ENCFF303LCC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF303LCC|/files/ENCFF303LCC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.37. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DWY | float |
TF_ChIP-seq_ENCSR000DWY |
TF_ChIP-seq ENCSR000DWY [biosample_summary="Homo sapiens fibroblast of lung male adult (45 years)" and target="CTCF"]
|
|
[3.67, 294] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF130ISX.bed.gz | 551.9 KB | d0fb5cbe9a387f92d5b1ed5bf321fb4b |
| ENCFF130ISX.bed.gz.dvc | 100.0 B | ce6a6a4ab92b14bc1f05fe33167ed617 |
| ENCFF130ISX.tabix.bed.gz | 430.3 KB | 9ef0b3c840053bb80bf2fcb241e78333 |
| ENCFF130ISX.tabix.bed.gz.dvc | 106.0 B | 84d5cc6f618c62d1b5a83cfb5a9e063a |
| ENCFF130ISX.tabix.bed.gz.tbi | 236.38 KB | 1098bbf85bd1bf53b6ef2c0a54a7eb7e |
| ENCFF130ISX.tabix.bed.gz.tbi.dvc | 110.0 B | 0faa67201a9c28f63a3cea2286131c99 |
| genomic_resource.yaml | 2.95 KB | 1f0fe79da578e00d2a032b1d18f7fbc4 |
| genomic_resource_original.yaml | 2.82 KB | 03ca515d25c07a6fa623b52d28024610 |
| statistics/ |