TF_ChIP-seq_ENCSR000DWQ
TF_ChIP-seq ENCSR000DWQ [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DWQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DWQ [biosamplesummary="Homo sapiens foreskin fibroblast male newborn" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male newborn output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN409AUH|/analyses/ENCAN409AUH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN409AUH|/analyses/ENCAN409AUH/} has in progress subobject document {6645d71a-2b60-4aa0-93ec-583c70a64cc6|/documents/6645d71a-2b60-4aa0-93ec-583c70a64cc6/} audit_warning: Processed alignments file {ENCFF874LCN|/files/ENCFF874LCN/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 15610128 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF987ARW|/files/ENCFF987ARW/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 19808776 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF874LCN|/files/ENCFF874LCN/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF874LCN|/files/ENCFF874LCN/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.36. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DWQ | float |
TF_ChIP-seq_ENCSR000DWQ |
TF_ChIP-seq ENCSR000DWQ [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="CTCF"]
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[4.74, 654] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF533NKJ.bed.gz | 787.09 KB | a74b3d9af840bbff1fc5466586c7807e |
| ENCFF533NKJ.bed.gz.dvc | 100.0 B | f43368bc54c3e420df3a3f27be6e68b8 |
| ENCFF533NKJ.tabix.bed.gz | 571.79 KB | 3640fb6d9ca7244f9fcfd404a9b716b1 |
| ENCFF533NKJ.tabix.bed.gz.dvc | 106.0 B | 2ef19b4eea47387f715573a2ed899d33 |
| ENCFF533NKJ.tabix.bed.gz.tbi | 290.75 KB | 1619f86493d3a285dd713d67ac2302b2 |
| ENCFF533NKJ.tabix.bed.gz.tbi.dvc | 110.0 B | 4c91e408a64ee2bf8a739419a2963cf8 |
| genomic_resource.yaml | 4.17 KB | 710d43e48d8ccafd681e228cdb4ca5af |
| genomic_resource_original.yaml | 4.06 KB | edc9c665ab8ae92a03f4a4710a933952 |
| statistics/ |