type: position_score
table:
  filename: ENCFF948CYD.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000DWH
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000DWH [TISSUE: Homo sapiens MCF-7, TARGET: CTCF]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN938MIE|/analyses/ENCAN938MIE/} has in progress\
    \ subobject document {6aef7ca2-3dc2-4f05-a296-d77045c73c16|/documents/6aef7ca2-3dc2-4f05-a296-d77045c73c16/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN938MIE|/analyses/ENCAN938MIE/}\
    \ has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF623IZG|/files/ENCFF623IZG/}\
    \ processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 19528958 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ CTCF-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**:\
    \ Processed alignments file {ENCFF340FIT|/files/ENCFF340FIT/} processed by ChIP-seq\
    \ ENCODE4 v1.5.1 GRCh38 pipeline has 18786248 usable fragments. The minimum ENCODE\
    \ standard for each replicate in a ChIP-seq experiment targeting CTCF-human and\
    \ investigated as a transcription factor is 10 million usable fragments. The recommended\
    \ value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq\
    \ data standards|/data-standards/chip-seq/} )"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000DWH
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens MCF-7
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001203/
    perturbed: false
    doi: 10.17989/ENCSR000DWH
    date_created: '2013-12-12T06:58:23.272927+00:00'
    date_released: '2012-01-17'
    submitter_comment: Replicate 2,1 of this experiment was previously attributed
      to biosample ENCBS241AAA but it has since been corrected to the current biosample.
      Please note that the biosample term has remain unchanged.
    target: CTCF
