TF_ChIP-seq_ENCSR000DUX
TF_ChIP-seq ENCSR000DUX [biosample_summary="Homo sapiens fibroblast of pulmonary artery" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DUX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DUX [biosamplesummary="Homo sapiens fibroblast of pulmonary artery" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN262PKK|/analyses/ENCAN262PKK/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF093QTY|/files/ENCFF093QTY/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF647KJA|/files/ENCFF647KJA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF288FQY|/files/ENCFF288FQY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF288FQY|/files/ENCFF288FQY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.16. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DUX | float |
TF_ChIP-seq_ENCSR000DUX |
TF_ChIP-seq ENCSR000DUX [biosample_summary="Homo sapiens fibroblast of pulmonary artery" and target="CTCF"]
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[5.73, 542] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF093QTY.bed.gz | 738.86 KB | 7e1a07731a23fe78f00dfe3d07795266 |
| ENCFF093QTY.bed.gz.dvc | 100.0 B | 25d2e03d5b954a658aeaa4cca1119b25 |
| ENCFF093QTY.tabix.bed.gz | 545.52 KB | e75357753b37d16fbd57b4629477ec41 |
| ENCFF093QTY.tabix.bed.gz.dvc | 106.0 B | a774a1488684b540e268ae5f58904219 |
| ENCFF093QTY.tabix.bed.gz.tbi | 287.51 KB | 216e14fc24add5facd8f0f7ab27709b1 |
| ENCFF093QTY.tabix.bed.gz.tbi.dvc | 110.0 B | 78d6a708dc9d31aca960f77ce7ba485f |
| genomic_resource.yaml | 3.57 KB | 7a6d9fa1950358aee9b085177863ab11 |
| genomic_resource_original.yaml | 3.45 KB | 3cb0d1bf8d7b61a33da6d0f40a55b6fa |
| statistics/ |