type: position_score
table:
  filename: ENCFF041ZEP.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000DUP
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000DUP [biosample_summary="Homo sapiens HL-60" and target="CTCF"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000DUP [biosample_summary="Homo sapiens HL-60" and target="CTCF"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1\n\n**summary**:\
    \ \n\n**output\\_type**: pseudoreplicated IDR thresholded peaks\n\n**audit\\_internal\\\
    _action**: Archived analysis {ENCAN407QSM|/analyses/ENCAN407QSM/} has in progress\
    \ subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}\n\
    \n**audit\\_not\\_compliant**: Processed alignments file {ENCFF340ENP|/files/ENCFF340ENP/}\
    \ processed by ChIP-seq ENCODE3 hg19 pipeline has 7145092 usable fragments. The\
    \ minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ CTCF-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000DUP
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens HL-60
    replication_type: unreplicated
    biosample_ontology: /biosample-types/cell_line_EFO_0002793/
    perturbed: false
    doi: 10.17989/ENCSR000DUP
    date_created: '2014-02-12T23:18:24.414485+00:00'
    date_released: '2011-03-17'
    submitter_comment: Replicate 1,1 of this experiment was previously attributed
      to biosample ENCBS069ENC but it has since been corrected to the current biosample.
      Please note that the biosample term has remain unchanged.
    target: CTCF
