TF_ChIP-seq_ENCSR000DTI
TF_ChIP-seq ENCSR000DTI [biosample_summary="Homo sapiens cardiac muscle cell" and target="CTCF"]
×
| Id: | TF_ChIP-seq/ENCSR000DTI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DTI [biosamplesummary="Homo sapiens cardiac muscle cell" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN637DIG|/analyses/ENCAN637DIG/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF599WUT|/files/ENCFF599WUT/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11575182 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF650OIZ|/files/ENCFF650OIZ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14359937 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF599WUT|/files/ENCFF599WUT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF599WUT|/files/ENCFF599WUT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.57. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF650OIZ|/files/ENCFF650OIZ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DTI | float |
TF_ChIP-seq_ENCSR000DTI |
TF_ChIP-seq ENCSR000DTI [biosample_summary="Homo sapiens cardiac muscle cell" and target="CTCF"]
|
|
[3.88, 679] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF266GGD.bed.gz | 745.95 KB | 0676fa28175caf0322d3a91f2a8ff9f1 |
| ENCFF266GGD.bed.gz.dvc | 100.0 B | 951f91cda4f238079194b3624fad3c17 |
| ENCFF266GGD.tabix.bed.gz | 575.23 KB | 529b54b933c361046a45a72e5e831dd2 |
| ENCFF266GGD.tabix.bed.gz.dvc | 106.0 B | 70e388a8672c7315af36b36802b26533 |
| ENCFF266GGD.tabix.bed.gz.tbi | 288.83 KB | b641e0a87dfdd350260c08590e0b2603 |
| ENCFF266GGD.tabix.bed.gz.tbi.dvc | 110.0 B | 070b138ffa0fa757578cbad4e6c344cb |
| genomic_resource.yaml | 4.63 KB | b61e4d81af3767eae54267c255d0e437 |
| genomic_resource_original.yaml | 4.53 KB | 7e711fbb8dc683e73c7e074a7aec9770 |
| statistics/ |