TF_ChIP-seq_ENCSR000DTF
TF_ChIP-seq ENCSR000DTF [biosample_summary="Homo sapiens cardiac fibroblast female adult" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DTF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DTF [biosamplesummary="Homo sapiens cardiac fibroblast female adult" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN394HCI|/analyses/ENCAN394HCI/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF419FEJ|/files/ENCFF419FEJ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15708766 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF419FEJ|/files/ENCFF419FEJ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF419FEJ|/files/ENCFF419FEJ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.76. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DTF | float |
TF_ChIP-seq_ENCSR000DTF |
TF_ChIP-seq ENCSR000DTF [biosample_summary="Homo sapiens cardiac fibroblast female adult" and target="CTCF"]
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[2.57, 284] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF344UBE.bed.gz | 663.66 KB | 756c19bfa7d7c4fd6559b250993d837b |
| ENCFF344UBE.bed.gz.dvc | 100.0 B | 4399ebbb51c3fb3076abcfe87f11bba8 |
| ENCFF344UBE.tabix.bed.gz | 512.11 KB | db4961a932573a9b4ecb1279580b5ef5 |
| ENCFF344UBE.tabix.bed.gz.dvc | 106.0 B | 5cbf9767103bb0ccc1d12f6dbf63a5c0 |
| ENCFF344UBE.tabix.bed.gz.tbi | 277.29 KB | 57e84b07265f7fdf94364911e11377b7 |
| ENCFF344UBE.tabix.bed.gz.tbi.dvc | 110.0 B | d8d0ae92e7286a893a331c7ed359cc4b |
| genomic_resource.yaml | 3.37 KB | a7f97b216496ad4fc24c2755b1490b02 |
| genomic_resource_original.yaml | 3.25 KB | cc44b8e008d4a4c328af23eca8d5ed75 |
| statistics/ |