TF_ChIP-seq_ENCSR000DSU
TF_ChIP-seq ENCSR000DSU [biosample_summary="Homo sapiens astrocyte of the spinal cord" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DSU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DSU [biosamplesummary="Homo sapiens astrocyte of the spinal cord" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN843KJN|/analyses/ENCAN843KJN/} has in progress subobject document {c063457f-0b71-4177-a919-fb7757fec3b4|/documents/c063457f-0b71-4177-a919-fb7757fec3b4/} audit_internal_action: Released analysis {ENCAN843KJN|/analyses/ENCAN843KJN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF118ICN|/files/ENCFF118ICN/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 12933205 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF916ZYU|/files/ENCFF916ZYU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 13060554 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF118ICN|/files/ENCFF118ICN/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF118ICN|/files/ENCFF118ICN/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.50. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DSU | float |
TF_ChIP-seq_ENCSR000DSU |
TF_ChIP-seq ENCSR000DSU [biosample_summary="Homo sapiens astrocyte of the spinal cord" and target="CTCF"]
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[3.61, 463] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF901WRI.bed.gz | 762.2 KB | 3dc5e7d20270e21dbc886cb5df402ccd |
| ENCFF901WRI.bed.gz.dvc | 100.0 B | 80745e83b4939be05acdb6dfe71b3b3b |
| ENCFF901WRI.tabix.bed.gz | 570.38 KB | b5584ab07f0ca593500f04fc54343caa |
| ENCFF901WRI.tabix.bed.gz.dvc | 106.0 B | ba634db5977d5851b7d1568d924e0b49 |
| ENCFF901WRI.tabix.bed.gz.tbi | 297.74 KB | ffe256cf49c686fa217e96bda74c15a5 |
| ENCFF901WRI.tabix.bed.gz.tbi.dvc | 110.0 B | 6dc3274758b4c0cc7feebc1399401f9b |
| genomic_resource.yaml | 3.94 KB | d185ce86366f807020a0b710c6688c05 |
| genomic_resource_original.yaml | 3.83 KB | 2aaea918c5b3b758116c32eada9f47e8 |
| statistics/ |