type: position_score
table:
  filename: ENCFF965YZI.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000DRE
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000DRE [TISSUE: Homo sapiens GM12865, TARGET: CTCF]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 2, Rep 3\n\
    \n**summary**: \n\n**output\\_type**: optimal IDR thresholded peaks\n\n**audit\\\
    _internal\\_action**: Archived analysis {ENCAN846DYX|/analyses/ENCAN846DYX/} has\
    \ in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}\n\
    \n**audit\\_internal\\_action**: File {ENCFF965YZI|/files/ENCFF965YZI/} with status\
    \ 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status\
    \ 'archived'.\n\n**audit\\_not\\_compliant**: Processed alignments file {ENCFF383IOB|/files/ENCFF383IOB/}\
    \ processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8105817 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ CTCF-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**:\
    \ Processed alignments file {ENCFF655BNX|/files/ENCFF655BNX/} processed by ChIP-seq\
    \ ENCODE3 GRCh38 pipeline has 13550892 usable fragments. The minimum ENCODE standard\
    \ for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated\
    \ as a transcription factor is 10 million usable fragments. The recommended value\
    \ is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data\
    \ standards|/data-standards/chip-seq/} )"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000DRE
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens GM12865
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0005338/
    perturbed: false
    doi: 10.17989/ENCSR000DRE
    date_created: '2013-12-12T06:56:42.693064+00:00'
    date_released: '2011-03-17'
    submitter_comment: Replicate 2,1 of this experiment was previously attributed
      to biosample ENCBS209AAA and replicate 3,1 of this experiment was previously
      attributed to biosample ENCBS209AAA and replicate 1,1 of this experiment was
      previously attributed to biosample ENCBS209AAA but they have since been corrected
      to the current biosamples. Please note that the biosample term has remain unchanged.
    target: CTCF
