TF_ChIP-seq_ENCSR000DQD
TF_ChIP-seq ENCSR000DQD [biosample_summary="Homo sapiens BE2C" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DQD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DQD [biosamplesummary="Homo sapiens BE2C" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN683GQK|/analyses/ENCAN683GQK/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF921SZK|/files/ENCFF921SZK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18705209 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF170UJD|/files/ENCFF170UJD/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17632303 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF170UJD|/files/ENCFF170UJD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DQD | float |
TF_ChIP-seq_ENCSR000DQD |
TF_ChIP-seq ENCSR000DQD [biosample_summary="Homo sapiens BE2C" and target="CTCF"]
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[5.19, 632] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF965BBC.bed.gz | 883.79 KB | b391745a29366760d1126d5c58fd8512 |
| ENCFF965BBC.bed.gz.dvc | 100.0 B | aa900d9d1ea76912a4973f69395ef105 |
| ENCFF965BBC.tabix.bed.gz | 676.56 KB | ee818453fe66883d62bb717d8601ea03 |
| ENCFF965BBC.tabix.bed.gz.dvc | 106.0 B | be11b8a7e3f86328a7a227672b8850ec |
| ENCFF965BBC.tabix.bed.gz.tbi | 337.08 KB | 37fa0731c6fda6ddd33493bdb45f8aa2 |
| ENCFF965BBC.tabix.bed.gz.tbi.dvc | 110.0 B | e1618e5522f97258897cb5638083fc24 |
| genomic_resource.yaml | 3.19 KB | c974c473b94e417002322a5f29cc46dd |
| genomic_resource_original.yaml | 3.1 KB | 7410247f1a7fc37ef0bc8a287e81751a |
| statistics/ |