TF_ChIP-seq_ENCSR000DPY
TF_ChIP-seq ENCSR000DPY [biosample_summary="Homo sapiens fibroblast of the aortic adventitia female" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DPY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DPY [biosamplesummary="Homo sapiens fibroblast of the aortic adventitia female" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF322FBH|/files/ENCFF322FBH/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN837CUR|/analyses/ENCAN837CUR/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF887VLI|/files/ENCFF887VLI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 7877595 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF971QGY|/files/ENCFF971QGY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF971QGY|/files/ENCFF971QGY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.10. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DPY | float |
TF_ChIP-seq_ENCSR000DPY |
TF_ChIP-seq ENCSR000DPY [biosample_summary="Homo sapiens fibroblast of the aortic adventitia female" and target="CTCF"]
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[5.24, 428] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF322FBH.bed.gz | 763.88 KB | d4def5129c79482333e8df8a68d6acd4 |
| ENCFF322FBH.bed.gz.dvc | 100.0 B | b9e396fe4adf3ed0e27f4f69f8eb6ccd |
| ENCFF322FBH.tabix.bed.gz | 546.3 KB | 69ca3f6a615ae6f601c3b028064248fa |
| ENCFF322FBH.tabix.bed.gz.dvc | 106.0 B | 9081b19981b3e5e5bb953fbef53c39b7 |
| ENCFF322FBH.tabix.bed.gz.tbi | 287.43 KB | 8b9a4d87b24628e98be67cbbcf1c1ac5 |
| ENCFF322FBH.tabix.bed.gz.tbi.dvc | 110.0 B | 298e3544da791099fe1dfd9406f615b2 |
| genomic_resource.yaml | 3.67 KB | 26bac594fd74ac33ebd1c5a9628f440d |
| genomic_resource_original.yaml | 3.55 KB | ddf236656cbc0a306affe876994384b7 |
| statistics/ |