TF_ChIP-seq_ENCSR000DPV
TF_ChIP-seq ENCSR000DPV [biosample_summary="Homo sapiens AG10803" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DPV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DPV [biosamplesummary="Homo sapiens AG10803" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN584VES|/analyses/ENCAN584VES/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN584VES|/analyses/ENCAN584VES/} has in progress subobject document {afe77870-6749-4a17-a621-06e400838ba1|/documents/afe77870-6749-4a17-a621-06e400838ba1/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF579VWA|/files/ENCFF579VWA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF579VWA|/files/ENCFF579VWA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.96. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF123OPY|/files/ENCFF123OPY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DPV | float |
TF_ChIP-seq_ENCSR000DPV |
TF_ChIP-seq ENCSR000DPV [biosample_summary="Homo sapiens AG10803" and target="CTCF"]
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[6.04, 526] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF926VWC.bed.gz | 811.53 KB | ef2633f9f7a4676e9eb01cf81e606a23 |
| ENCFF926VWC.bed.gz.dvc | 100.0 B | fd131c91aa33f6df62a198ccba309e94 |
| ENCFF926VWC.tabix.bed.gz | 596.98 KB | 1923b44b099cd490649288c8bff592e2 |
| ENCFF926VWC.tabix.bed.gz.dvc | 106.0 B | 78e04d36a179ebe3637f8738d405f2f3 |
| ENCFF926VWC.tabix.bed.gz.tbi | 303.02 KB | 66b40d86707dd1ebc84e9ffa496adc55 |
| ENCFF926VWC.tabix.bed.gz.tbi.dvc | 110.0 B | 0168598f32377f2fd6b770e30e38d20c |
| genomic_resource.yaml | 3.86 KB | 1e82e2eaa5b6e87dd58e41c47fc6898e |
| genomic_resource_original.yaml | 3.77 KB | 53b1a5c9c8c4fe0ce2fd365f685030a3 |
| statistics/ |