type: position_score
table:
  filename: ENCFF788LNG.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000DPM
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000DPM [biosample_summary="Homo sapiens AG04450" and target="CTCF"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000DPM [biosample_summary="Homo sapiens AG04450" and target="CTCF"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: optimal IDR thresholded peaks\n\n**audit\\\
    _internal\\_action**: Archived analysis {ENCAN299KLM|/analyses/ENCAN299KLM/} has\
    \ in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}\n\
    \n**audit\\_internal\\_action**: File {ENCFF788LNG|/files/ENCFF788LNG/} with status\
    \ 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status\
    \ 'archived'.\n\n**audit\\_warning**: Processed alignments file {ENCFF811FBC|/files/ENCFF811FBC/}\
    \ processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15245443 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ CTCF-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**:\
    \ Processed alignments file {ENCFF402WKZ|/files/ENCFF402WKZ/} processed by ChIP-seq\
    \ ENCODE3 GRCh38 pipeline has 17584770 usable fragments. The minimum ENCODE standard\
    \ for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated\
    \ as a transcription factor is 10 million usable fragments. The recommended value\
    \ is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data\
    \ standards|/data-standards/chip-seq/} )"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000DPM
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens AG04450
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0006270/
    perturbed: false
    doi: 10.17989/ENCSR000DPM
    date_created: '2014-02-12T22:43:21.497856+00:00'
    date_released: '2011-03-17'
    submitter_comment: Replicate 2,1 of this experiment was previously attributed
      to biosample ENCBS004ENC but it has since been corrected to the current biosample.
      Please note that the biosample term has remain unchanged.
    target: CTCF
