TF_ChIP-seq_ENCSR000DOF
TF_ChIP-seq ENCSR000DOF [biosample_summary="Homo sapiens K562" and target="NELFE"]
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| Id: | TF_ChIP-seq/ENCSR000DOF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DOF [biosamplesummary="Homo sapiens K562" and target="NELFE"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN868OFZ|/analyses/ENCAN868OFZ/} has in progress subobject document {f20aad6c-b90c-4276-87b7-a3b56010f39e|/documents/f20aad6c-b90c-4276-87b7-a3b56010f39e/} audit_internal_action: Released analysis {ENCAN868OFZ|/analyses/ENCAN868OFZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF858ZKD|/files/ENCFF858ZKD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 6966472 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NELFE-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_not_compliant: Processed alignments file {ENCFF835ULA|/files/ENCFF835ULA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 6673034 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NELFE-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF858ZKD|/files/ENCFF858ZKD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF858ZKD|/files/ENCFF858ZKD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.67. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DOF | float |
TF_ChIP-seq_ENCSR000DOF |
TF_ChIP-seq ENCSR000DOF [biosample_summary="Homo sapiens K562" and target="NELFE"]
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[2.69, 153] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF265KKE.bed.gz | 10.32 KB | bf1db716a855ef0b31d522eab955d11a |
| ENCFF265KKE.bed.gz.dvc | 99.0 B | ef954b7ed283ede35e8044ccdb830a06 |
| ENCFF265KKE.tabix.bed.gz | 7.39 KB | 09919b4f327822b0a00822ee96870bb4 |
| ENCFF265KKE.tabix.bed.gz.dvc | 104.0 B | 83405c55616b842be03e583a123b2734 |
| ENCFF265KKE.tabix.bed.gz.tbi | 9.97 KB | 073a6b966b8e1aacd094fd11befec151 |
| ENCFF265KKE.tabix.bed.gz.tbi.dvc | 109.0 B | 3569ed53355cf1b5d6439dfd4abfe48b |
| genomic_resource.yaml | 3.89 KB | 31e65603be890e1ff50a0d15a50e266a |
| genomic_resource_original.yaml | 3.79 KB | 94d92955ea59eddc1c1a86ef04441057 |
| statistics/ |