TF_ChIP-seq_ENCSR000DNZ
TF_ChIP-seq ENCSR000DNZ [biosample_summary="Homo sapiens K562" and target="ATF1"]
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| Id: | TF_ChIP-seq/ENCSR000DNZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DNZ [biosamplesummary="Homo sapiens K562" and target="ATF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN144ZUM|/analyses/ENCAN144ZUM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN144ZUM|/analyses/ENCAN144ZUM/} has in progress subobject document {2be83b9e-995c-4296-9848-c9d61610dad2|/documents/2be83b9e-995c-4296-9848-c9d61610dad2/} audit_warning: Processed alignments file {ENCFF464SJL|/files/ENCFF464SJL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19534664 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ATF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF464SJL|/files/ENCFF464SJL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF464SJL|/files/ENCFF464SJL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.97. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DNZ | float |
TF_ChIP-seq_ENCSR000DNZ |
TF_ChIP-seq ENCSR000DNZ [biosample_summary="Homo sapiens K562" and target="ATF1"]
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[6.03, 432] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF206BGR.bed.gz | 285.37 KB | 13a758619083d7b597e891eed150245a |
| ENCFF206BGR.bed.gz.dvc | 100.0 B | c048bf479f5e1969308845a50268d8fe |
| ENCFF206BGR.tabix.bed.gz | 198.52 KB | 87ba596aeca5967f6a5caf2251ee2d54 |
| ENCFF206BGR.tabix.bed.gz.dvc | 106.0 B | 19684f1a32abcd4264263b2fb2685db0 |
| ENCFF206BGR.tabix.bed.gz.tbi | 124.77 KB | 07d6afc7924ab8c8ff80154777e2d4b8 |
| ENCFF206BGR.tabix.bed.gz.tbi.dvc | 110.0 B | 41e760d491741a827d540436cd603d93 |
| genomic_resource.yaml | 3.37 KB | 7d0082d1d3563a65b697276c83579791 |
| genomic_resource_original.yaml | 3.28 KB | 986a66f94eac8529cca5a26c0cea6936 |
| statistics/ |