TF_ChIP-seq_ENCSR000DNY
TF_ChIP-seq ENCSR000DNY [biosample_summary="Homo sapiens HeLa-S3" and target="GTF3C2"]
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| Id: | TF_ChIP-seq/ENCSR000DNY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DNY [biosamplesummary="Homo sapiens HeLa-S3" and target="GTF3C2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN562PXH|/analyses/ENCAN562PXH/} has in progress subobject document {247ac4e4-41a5-4540-92aa-56d8d4df5686|/documents/247ac4e4-41a5-4540-92aa-56d8d4df5686/} audit_internal_action: Released analysis {ENCAN562PXH|/analyses/ENCAN562PXH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF073MGX|/files/ENCFF073MGX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14949103 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GTF3C2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF166ETP|/files/ENCFF166ETP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13986429 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GTF3C2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF166ETP|/files/ENCFF166ETP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF166ETP|/files/ENCFF166ETP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.36. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DNY | float |
TF_ChIP-seq_ENCSR000DNY |
TF_ChIP-seq ENCSR000DNY [biosample_summary="Homo sapiens HeLa-S3" and target="GTF3C2"]
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[5.75, 384] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF311DEF.bed.gz | 51.05 KB | 17d1ea55925d419ff3831bf4f0415933 |
| ENCFF311DEF.bed.gz.dvc | 99.0 B | 089458e48f435c405327d3d4ec04fb49 |
| ENCFF311DEF.tabix.bed.gz | 35.19 KB | 5f34058b0c38ed6491539f9c95643c65 |
| ENCFF311DEF.tabix.bed.gz.dvc | 105.0 B | 43b048deff5ebce84f88a45f91ba4661 |
| ENCFF311DEF.tabix.bed.gz.tbi | 27.14 KB | cfac1d2a186b79fce1915d9eed092c9f |
| ENCFF311DEF.tabix.bed.gz.tbi.dvc | 109.0 B | 474f449488a9f90f99bc9e596f208352 |
| genomic_resource.yaml | 3.9 KB | 8ca8686f9b8aa08ca3e58026271b0d6a |
| genomic_resource_original.yaml | 3.8 KB | b6a0a1c474c312a731bad20d62e1bcb6 |
| statistics/ |