TF_ChIP-seq_ENCSR000DNU
TF_ChIP-seq ENCSR000DNU [biosample_summary="Homo sapiens HeLa-S3" and target="POLR3A"]
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| Id: | TF_ChIP-seq/ENCSR000DNU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DNU [biosamplesummary="Homo sapiens HeLa-S3" and target="POLR3A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN230FDV|/analyses/ENCAN230FDV/} has in progress subobject document {9c9bb134-3a78-4add-a3fe-334644e85aa4|/documents/9c9bb134-3a78-4add-a3fe-334644e85aa4/} audit_internal_action: Released analysis {ENCAN230FDV|/analyses/ENCAN230FDV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF699AEX|/files/ENCFF699AEX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13110046 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR3A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF954BIW|/files/ENCFF954BIW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13576513 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR3A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF699AEX|/files/ENCFF699AEX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DNU | float |
TF_ChIP-seq_ENCSR000DNU |
TF_ChIP-seq ENCSR000DNU [biosample_summary="Homo sapiens HeLa-S3" and target="POLR3A"]
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[5.95, 720] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF767DMU.bed.gz | 57.34 KB | 8aaef864b7f09e23b7d3ce4d3c449e2c |
| ENCFF767DMU.bed.gz.dvc | 99.0 B | 7b2eed5abeb1c9a270d0cacb08b59021 |
| ENCFF767DMU.tabix.bed.gz | 43.73 KB | a3c17361707b8204101579741cbfd89c |
| ENCFF767DMU.tabix.bed.gz.dvc | 105.0 B | 06dbf009470ca8b77bf978a926af282a |
| ENCFF767DMU.tabix.bed.gz.tbi | 27.78 KB | d7e6d0303ed13a7be51f627db969e442 |
| ENCFF767DMU.tabix.bed.gz.tbi.dvc | 109.0 B | b052a19e5fcf3f76d1fedd0f07ce6f06 |
| genomic_resource.yaml | 3.25 KB | 934bb5f01eef87ef06628d77c2b683e2 |
| genomic_resource_original.yaml | 3.15 KB | c6ff90ca66dc6afbbf1ad75e2d67f043 |
| statistics/ |